rs31453505 SNP Detail

Summary

• ID
  rs31453505
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:167758082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTTATAAAT AGTCAAAAAA GGAATAAGAC AGCTGGCTGT
  TACTTTCAAG GAGCTCCTGG CCAGCTGTGG ACATAGGCAC ACACCAGGTC ATTCATTGCA
  Y
  GGCAGCCCGC ACTGCAGAGT CTGGTGTGTT GGAGGGGTGG GCATGGGTGT AGAATAAGGG
  CCAAGAAGAG CGACAACAAC CTGTGTTTCA ACTGCAGGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45060185	mCV24467544	ABI	CRAMUS_MOUSE	f	SNP		T					T		C
ss49739806	NES13034103	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T	C	T	T	C	T	T	C	T
ss146052736	ENSMUSSNP4766313	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31453505					SNP	T	T	T	T	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49739806	NES13034103	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167758082 () rs orientation: forward

Symbol	Name	Function Class
Cpgi987	CpG island 987	418 bp distal
D1Mit16	DNA segment, Chr 1, Massachusetts Institute of Technology 16	1160 bp distal
Rr422777	regulatory region 422777	1899 bp distal
Rr422779	regulatory region 422779	within coordinates
Rr422780	regulatory region 422780	1630 bp proximal
Rr422781	regulatory region 422781	1753 bp proximal