rs31452176 SNP Detail

Summary

• ID
  rs31452176
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114816742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAGAGCCT TTGAGTTAGA
  GCATGGCAGA GTGGCTTTGC TGTTCAGAAA GCCAAGGTGG TGCCAGAGGG GGAGGAAGAC
  TCGTTCTGGC CACCACACTG CACTGAGCCT CCCTCCCCCT CTCTCAGCCA TTTCCTGGAA
  AACCTACCTA GGGAAGTCAT TGCAGACCTG GGCTTGGCTT GTCAAGGACC CACCATGCAT
  Y
  CAGGAAGTGA TTTTTTTCCT CTATTGAAAA CACCAGCATT TAGTATTAAC TTTTTAAATT
  GGTGTTTGGC AGAGCCTACG TTCTTTTCCG TCTCCATGCT CCAGGCATGT ATCTCTATAA
  CAGACATAGG CAGTTGTAAG TTCTCTCCTT GTATTCTGGA AACAAATTGG CACATTCCAG
  CACGAGAGGG TAGCACTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss48052916	NES11876013	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T	T		C	T	C		T
ss321914858	CHEV_6_114789799	CHEVERUD	SCREENING_POP	f	SNP									C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31452176					SNP	T	T	C	T	T	T	T	T	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48052916	NES11876013	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114816742 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atg7	autophagy related 7			Intron
				Noncoding-Transcript-Variant
Gm67840	predicted gene, 67840			within coordinates
Rr636840	regulatory region 636840			520 bp distal
Rr636841	regulatory region 636841			498 bp proximal