rs31451030 SNP Detail

Summary

• ID
  rs31451030
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114815429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTGCTCA TGAGCCTCAG
  TACCAAGTCA GATTCTGAAA CTGTACCTTG CCAGCAGCCA GAGTGCAGAC TCTGACTAGT
  GTGCTTGGTG GTGGTGGAGT TGTTGTCGGT GGTGGTGGGG AGGTGGTGGT GATGGTGGTA
  GTGGTATGAA ATCTTCTGGG GTCTCGGAAG CTCTGCCTTT ATTTTTTAAA ACCTAGGGCA
  R
  TGGAGTTCCC CATTTACTGC TGCCTTCCTT CCTTTTTTCT TGCTGTAAAA AGACATCATA
  ACCAAGGCAG CTTACAGTAA AAAGAGTTTA TTGGGGCTTA TAGTTTCAGA CATTAGAGTC
  CATGTCCATC GTGGCAGGGA ACATGGTAGC AGGCAGGCAG ACATGGCGCT GGAATAATAG
  CTGAGAGCTC ACTTCTTGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss48052910	NES11876074	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G	G		A	G	A		G
ss321914844	CHEV_6_114788486	CHEVERUD	SCREENING_POP	f	SNP										A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31451030					SNP	G	G	A	G	G	G	G	G	G	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48052910	NES11876074	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114815429 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atg7	autophagy related 7			Intron
				Noncoding-Transcript-Variant
Gm67840	predicted gene, 67840			72 bp downstream
Rr636840	regulatory region 636840			460 bp proximal
Rr636841	regulatory region 636841			1811 bp proximal