rs31451028 SNP Detail

Summary

• ID
  rs31451028
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114815284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGACAGAAT CCAAGTTTCC
  CACGTGACAA ATGAAGAAAG ACTTGCTCAT TCCCAGGCTT CCTTGATGCT CTGAGCACTC
  AGCTGGTCAA ACTTTCCCAG CTGGAATCCC AGAGAACCCT GTACATGGAT AAATACCAGC
  AGCATGCAGT GCTCATGAGC CTCAGTACCA AGTCAGATTC TGAAACTGTA CCTTGCCAGC
  R
  GCCAGAGTGC AGACTCTGAC TAGTGTGCTT GGTGGTGGTG GAGTTGTTGT CGGTGGTGGT
  GGGGAGGTGG TGGTGATGGT GGTAGTGGTA TGAAATCTTC TGGGGTCTCG GAAGCTCTGC
  CTTTATTTTT TAAAACCTAG GGCAGTGGAG TTCCCCATTT ACTGCTGCCT TCCTTCCTTT
  TTTCTTGCTG TAAAAAGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss48052908	NES11876108	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	A	A		A	A	G		A
ss321914843	CHEV_6_114788341	CHEVERUD	SCREENING_POP	f	SNP									G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31451028					SNP	A	A	G	A	A	A	A	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48052908	NES11876108	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114815284 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atg7	autophagy related 7			Intron
				Noncoding-Transcript-Variant
Gm67840	predicted gene, 67840			217 bp downstream
Rr636840	regulatory region 636840			605 bp proximal
Rr636841	regulatory region 636841			1956 bp proximal