rs31450514 SNP Detail

Summary

• ID
  rs31450514
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151856214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGAAGAC ACCAGGGGAC
  ACGAACCAAC AGCTCATGGT GCCTTCCCTT CCCAGGCCTC TGTCGCTTTC TTAAAACCAC
  TCCTCTCGAG TCACTACCAA CCGTATAGAA CAGGTGTTCA GAATGCTTCT AGTCAGGTTT
  TGTTTTTTTA GTTTGGTTTG GTTTGGTTTG GTTTGGTTTT TCGAGACAGG GTTTCTCTGT
  R
  TAGCCCTGGC TGTCCTGGAA CTCACTTTGT AGACCAGGCT GGCCTCGAAC TCAGAAATCC
  GCCTGCCTCT GCCTCCCAAG TGCTGGGATT AAAGGTGTGT GCCACCACGC CCAGCTCGCC
  AGGTTTGGGT TTGGTGGTCA TGTAATCCCC CAAATTTAGG AAGGTAAGAC AGGGGAAATC
  GAAACTCCAA AGCTGACATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45535946	mCV24210666	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss136101114	ENSMUSSNP3764769	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321028242	CHEV_3_151813541	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs31450514					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151856214 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Gm64753	predicted gene, 64753			1713 bp upstream
Rr587468	regulatory region 587468			149 bp distal
Rr587469	regulatory region 587469			1223 bp proximal
Rr587470	regulatory region 587470			1749 bp proximal