rs31450056 SNP Detail

Summary

• ID
  rs31450056
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114872381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATACTATG CAAAACCATT
  TGTAGTCCCA GGAGTGACTG CAAAGACCAT TCCTCTCCTT CAGACCTCAC GGCTTGTACC
  AATGTTTCCA GAAGTGCATA ACGCACAGCT TGGGTGGACT GCCACCAAGA AACTCCCATC
  ACACCTGTCA CCGTACCACA AAGGAAGCTC CCCCATGCAA CAGCAACAGG AAAGGCTGTC
  W
  AAGGCAGCGC TTGGCTTGAT TATTTTGATT TGTGTGAGTG TGAATGTGTG TGTGAATACG
  AGTGAGTGTC AAGTGTGTGC ATTTGCCTGT GGAGGCCAGA AAAGGTCATC AGATTCCCTG
  GAGCTGGAGT GACAGATGGT CGTGAGCCAT CTGGCCTGGG TGCTGTGAAC AGAACTCTGG
  GCCTCTGCAA GGGTGGTTAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	WSB/EiJ
ss48053236	NES11874129	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	WSB/EiJ
rs31450056					SNP	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48053236	NES11874129	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114872381 () rs orientation: forward

Symbol	Name	Function Class
Rr368149	regulatory region 368149	1478 bp downstream
Rr636859	regulatory region 636859	350 bp distal
Rr636860	regulatory region 636860	431 bp distal
Rr636861	regulatory region 636861	334 bp distal
Rr636862	regulatory region 636862	960 bp proximal
Vgll4	vestigial like family member 4	Intron