rs31450054 SNP Detail

Summary

• ID
  rs31450054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114872266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTAGAAG ATGCTAAAGT
  CGTTTTTAAC ACTGAGGGAA AAGGTACTAA AATATGTTGA ATACAAAGCT GTGGCAATTG
  TACCCAGACG CTGCCATTAG AAGGGGGCAT TAAGTCTATA CTATGCAAAA CCATTTGTAG
  TCCCAGGAGT GACTGCAAAG ACCATTCCTC TCCTTCAGAC CTCACGGCTT GTACCAATGT
  Y
  TCCAGAAGTG CATAACGCAC AGCTTGGGTG GACTGCCACC AAGAAACTCC CATCACACCT
  GTCACCGTAC CACAAAGGAA GCTCCCCCAT GCAACAGCAA CAGGAAAGGC TGTCAAAGGC
  AGCGCTTGGC TTGATTATTT TGATTTGTGT GAGTGTGAAT GTGTGTGTGA ATACGAGTGA
  GTGTCAAGTG TGTGCATTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48053234	NES11874128	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31450054					SNP	T	T	C	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48053234	NES11874128	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114872266 () rs orientation: forward

Symbol	Name	Function Class
Rr368149	regulatory region 368149	1363 bp downstream
Rr636859	regulatory region 636859	235 bp distal
Rr636860	regulatory region 636860	316 bp distal
Rr636861	regulatory region 636861	219 bp distal
Rr636862	regulatory region 636862	1075 bp proximal
Vgll4	vestigial like family member 4	Intron