rs31449214 SNP Detail

Summary

• ID
  rs31449214
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:145347822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTATCATACG GAATTTGTCT CTGTATGCCT TCCTTTTATA
  AAGGCAAAAT AGCAACAAGA AACCCCAAAC ATTGCAAAAC ATTTTAAATG GCCAAGTATC
  R
  TCTTAAATGC AAGAGGTCAG CTAAAGACAT GGGCTACTTT CCAAGAACAA ACTAAATTTG
  GAATATAGGA GGGACCTCTC AGAAAGCCTT TCCCAGGAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45536086	mCV23542949	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					G		A
ss51671216	NES14639408	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	A	G	G		G	G	G	G		G
ss136039568	ENSMUSSNP5907017	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							A
ss321008717	CHEV_3_145305031	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31449214					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51671216	NES14639408	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145347822 () rs orientation: forward

Symbol	Name	Function Class
Rr586807	regulatory region 586807	1278 bp distal
Rr586808	regulatory region 586808	872 bp proximal