rs31449098 SNP Detail

Summary

• ID
  rs31449098
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114818532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCCCGCG CTGCACACAC
  AATAAAAAGT GTTGGCCTCT CACAGCATGA AAGCCCTTTG CATATGATCC ACCCCACCCC
  CACCCCCACC CCACACTCCC CACCCTTGCA CAGTTTGCTC TCTGGTGTTA GAAGTCTAGC
  CTGCTCTCTG CTAGCCAGCC AGCTGAGGCC TCAAGCCTGT GTTTTCCTGT TCTCAGACAT
  Y
  TATTCCTCTG TGAAGTGGAC ACAGGGATCC CCCAGAGGGC TCTAGCAGGG CCAGGAAGAT
  ACTGCAGGTA GTTTTGTCAA GTACTTCCCA CAGGATGATG AGATCATGTT AATGTGGCTC
  TCAAAACTTG TAAGGGATCC AACTTCAGTC ATTTCTCGTC CCTCTCCTCC CCTGGGTTAT
  AGGGGGTCAC TCAGAAGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48052942	NES11875952	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31449098					SNP	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48052942	NES11875952	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114818532 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atg7	autophagy related 7			Intron
				Noncoding-Transcript-Variant
Gm67840	predicted gene, 67840			1269 bp upstream
Rr636841	regulatory region 636841			1090 bp distal
Rr636842	regulatory region 636842			1680 bp proximal