rs31449072 SNP Detail

Summary

• ID
  rs31449072
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114872229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGACACCTA TAGTTCTTAA
  TCAACCTCCA CTACACTAAA GTAGAAGATG CTAAAGTCGT TTTTAACACT GAGGGAAAAG
  GTACTAAAAT ATGTTGAATA CAAAGCTGTG GCAATTGTAC CCAGACGCTG CCATTAGAAG
  GGGGCATTAA GTCTATACTA TGCAAAACCA TTTGTAGTCC CAGGAGTGAC TGCAAAGACC
  M
  TTCCTCTCCT TCAGACCTCA CGGCTTGTAC CAATGTTTCC AGAAGTGCAT AACGCACAGC
  TTGGGTGGAC TGCCACCAAG AAACTCCCAT CACACCTGTC ACCGTACCAC AAAGGAAGCT
  CCCCCATGCA ACAGCAACAG GAAAGGCTGT CAAAGGCAGC GCTTGGCTTG ATTATTTTGA
  TTTGTGTGAG TGTGAATGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss48053232	NES11874127	PERLEGEN	MM_PANEL2	f	SNP	A	C	C	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs31449072					SNP	A	C	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48053232	NES11874127	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114872229 () rs orientation: forward

Symbol	Name	Function Class
Rr368149	regulatory region 368149	1326 bp downstream
Rr636859	regulatory region 636859	198 bp distal
Rr636860	regulatory region 636860	279 bp distal
Rr636861	regulatory region 636861	182 bp distal
Rr636862	regulatory region 636862	1112 bp proximal
Vgll4	vestigial like family member 4	Intron