rs31449070 SNP Detail

Summary

• ID
  rs31449070
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114872085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCCAAAAAT CTAGAAAAAA AAAAAAAAAA AAAGTCCCAA
  CCATATGACA CCTATAGTTC TTAATCAACC TCCACTACAC TAAAGTAGAA GATGCTAAAG
  Y
  CGTTTTTAAC ACTGAGGGAA AAGGTACTAA AATATGTTGA ATACAAAGCT GTGGCAATTG
  TACCCAGACG CTGCCATTAG AAGGGGGCAT TAAGTCTATA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss48053230	NES11874126	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs31449070					SNP	T	C	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48053230	NES11874126	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114872085 () rs orientation: forward

Symbol	Name	Function Class
Rr368149	regulatory region 368149	1182 bp downstream
Rr636859	regulatory region 636859	54 bp distal
Rr636860	regulatory region 636860	135 bp distal
Rr636861	regulatory region 636861	38 bp distal
Rr636862	regulatory region 636862	1256 bp proximal
Vgll4	vestigial like family member 4	Intron