rs31449068 SNP Detail

Summary

• ID
  rs31449068
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114871152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCAGCTGC ACTGGCGTGT
  CTCCTGTCTG ACCACAGCCG TGGTGACCAG ACTGACGTCA CTGTCTCGGT GGGAGGGAAG
  ACACCCCAGT ACACTATCTA CCCTGCAACA TTGCACAACC CTCTCATGGG CCCAGGGCCC
  TGTGGGGCAG GGGCCCAGGC AGCTGAGGCA CATTTATTTT CTTTTAAATA CTGAGTCTCC
  S
  GCACAGAGAT GAACAGCTGA GGAGAAGGTG CACAGAAATC AGACTCTTTT CAGCAGTTCA
  GCTGTGGCCA TCGGGTTCTG GGTCACTTTT TGTTTTTAAA AGAAGGGCTG TTGGGCAACT
  TGGTGAGTAG GCCCAAGCCA GTAGAGATAA AAGATGTGAC ATACTGTCTG CCACAGCCCA
  AGTCTGGCCC ATACTTCCAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss48053228	NES11874186	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	G	C	G	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31449068					SNP	G	G	C	G	C	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48053228	NES11874186	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114871152 () rs orientation: forward

Symbol	Name	Function Class
Rr368149	regulatory region 368149	249 bp downstream
Rr636858	regulatory region 636858	1179 bp distal
Rr636859	regulatory region 636859	within coordinates
Rr636860	regulatory region 636860	777 bp proximal
Rr636861	regulatory region 636861	874 bp proximal
Vgll4	vestigial like family member 4	Intron