rs31449064 SNP Detail

Summary

• ID
  rs31449064
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114869949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGCAGAGT GGCTGAGCTT
  CAGTGAGGCT AGCACAGAGG AGGAAAAGTC CACAGGAGAT TTCCCAGGAG TGGGGTGGGA
  CAAAGGACTC TGTAGAGTCC CCTGAGCACT TCTGAAGTCT CATCACACGT ATGACCAGGG
  TGACGTGAAT GGCTCGCACA GGTGAGCTGC AGACGGGAAG TATGCCCTCT GCTAATCAGA
  S
  GAACACCTCT ATCACAAAGC TGAAGGAAGG GCAGTGACCC TCAGTGGTGA CTGGGTTTGG
  CCACTGATAC CCCCTTGTTC ATCTTTGGGT CCATCCCCAT GCCAAAGGAA GCTATCCAAT
  GCTTATATTT TAAAGCCCAC TTGCTGTGCT CTTGTATGTG GCAGAGCAAA GAATGATTTC
  AGCAGGGTCT GGGGGCAGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss48053224	NES11874250	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31449064					SNP	C	C	G	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48053224	NES11874250	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114869949 () rs orientation: forward

Symbol	Name	Function Class
Rr368149	regulatory region 368149	845 bp upstream
Rr636858	regulatory region 636858	within coordinates
Rr636859	regulatory region 636859	416 bp proximal
Rr636860	regulatory region 636860	1980 bp proximal
Vgll4	vestigial like family member 4	Intron