rs31447157 SNP Detail

Summary

• ID
  rs31447157
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:160760608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AATCAGAGTT TTTAACTATA ATGCGCTAAA TTACTATAGC CAGATTGGCA TATTAATATC
  AAAGAGAACG TTATAATGAG AATGAGGTGT GGGATAGTAG GAGTTCTCTG AACTGTCTTT
  GTCATTTTCT GTAAATTTAA AATGCTTCTG TGAAACTGCT TTTGTTTTGT TTGTTTGTTT
  GGTTGGTTTG GTTTGTTTTT AACCAGGAAA AAAATGATTA ATCCTACCGC TAATCAGGAA
  AATAGAGATT TAGATAACAG CAGGGTTTGT TTTTGTTTCT GTTTTTTTTG TTTTGTTTTG
  K
  TTTGTTTTGG TTTTGTTTGT TTGTTTTTGA TCTTCCCACA AACCAGTGTC TGAATGGTGG
  TCCCATGTGG TCATGCAGGG CTCTTGCATG TGCTAGGGAG GGTGCAATCT GTCAGGCTCT
  GGAAAATGCG TACAACCCTG TAGCTATAGT GGCTGCACTT ACAGGTTATC AAACCAGATA
  GTTTTAACAC ATACATACAG GGGGCACCTG CAGAGGAATA TCACTACAGT CTCTAAAAGC
  AACAAGTTAA AAATAGCCTA AACATCAGAA CTGATTCACT GTGTTGTCTA TACCAGAGAG
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45034819	mCV24552657	ABI	CRAMUS_MOUSE	f	SNP	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31447157					SNP	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160760608 () rs orientation: forward

Symbol	Name	Function Class
Rc3h1	RING CCCH (C3H) domains 1	Intron
Rr421728	regulatory region 421728	967 bp proximal
Rr421729	regulatory region 421729	980 bp proximal
Rr421730	regulatory region 421730	1277 bp proximal
Rr421731	regulatory region 421731	1514 bp proximal