rs3144603 SNP Detail

Summary

• ID
  rs3144603
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118526965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAG CGAGCCACGG CCCAGGAGCT
  Y
  CTGGATCACC CGTTTCTGCT GCAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45208925	mCV22538149	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss147310073	ENSMUSSNP2979819	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss320471352	CHEV_2_118522220	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3144603					SNP	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118526965 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12087	CpG island 12087			within coordinates
Pak6	p21 (RAC1) activated kinase 6			Coding-Synonymous
				Noncoding-Transcript-Variant
Rr563299	regulatory region 563299			296 bp distal
Rr563300	regulatory region 563300			601 bp distal
Rr563301	regulatory region 563301			308 bp proximal
Rr563302	regulatory region 563302			1210 bp proximal