rs3144601 SNP Detail

Summary

• ID
  rs3144601
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118526060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGC TGCAGCAGGA GAGCCACGAC
  M
  CAGCAGGCTC TTCGCCTATC CCTAT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45281402	mCV22538140	ABI	CRAMUS_MOUSE	f	SNP	C	A	C
ss320471350	CHEV_2_118521315	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3144601					SNP	C	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118526060 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12087	CpG island 12087			842 bp proximal
Pak6	p21 (RAC1) activated kinase 6			Intron
				Noncoding-Transcript-Variant
Rr563299	regulatory region 563299			3 bp proximal
Rr563300	regulatory region 563300			283 bp proximal
Rr563301	regulatory region 563301			1213 bp proximal