rs3144600 SNP Detail

Summary

• ID
  rs3144600
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118525899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCT CCTGAGACAG GAGGACAGGG
  R
  CCTGGAGCCA TGGACTCAGA AGGAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss37652324	NES09028440	PERLEGEN	MM_PANEL2	f	SNP		G		A		A	A		G
ss45283292	mCV22538132	ABI	CRAMUS_MOUSE	f	SNP	G		G
ss320471348	CHEV_2_118521154	CHEVERUD	SCREENING_POP	f	SNP					A			G
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs3144600					SNP	G	G	G	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652324	NES09028440	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118525899 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12087	CpG island 12087			1003 bp proximal
Pak6	p21 (RAC1) activated kinase 6			Intron
				Noncoding-Transcript-Variant
Rr563299	regulatory region 563299			164 bp proximal
Rr563300	regulatory region 563300			444 bp proximal
Rr563301	regulatory region 563301			1374 bp proximal