rs3144599 SNP Detail

Summary

• ID
  rs3144599
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118525393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTGA AGGTCTGCAC CATTGCACCC
  W
  GACCTGCCTC CCCTTTTTGA TGGAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45218766	mCV22538131	ABI	CRAMUS_MOUSE	f	SNP	A	A	T
ss147310063	ENSMUSSNP7211325	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320471347	CHEV_2_118520648	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs3144599					SNP	A	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118525393 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12087	CpG island 12087			1509 bp proximal
Pak6	p21 (RAC1) activated kinase 6			Intron
				Noncoding-Transcript-Variant
Rr563299	regulatory region 563299			670 bp proximal
Rr563300	regulatory region 563300			950 bp proximal
Rr563301	regulatory region 563301			1880 bp proximal