rs3144406 SNP Detail

Summary

• ID
  rs3144406
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118597119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGCATCAA CTGTGGGCTT CACCTAACCA CATAAGCAAG
  ACTCATACAG GAAGAGGCAG AAAAACAATG GTGGCCCACC CCCACTGCCG TGTGCGTGTG
  Y
  GTGTGTGTGT GTGTGTGTGT GTCTGTGTGT GTTGAAACAG GCTTTCCCTG ACTTTCCTGG
  AACTCACTCT GTAGACCAGG CTGCCCTGGA ACTCAGAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45327687	mCV22541648	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C	T
ss147312104	ENSMUSSNP248618	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3144406					SNP	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118597119 () rs orientation: forward

Symbol	Name	Function Class
Rr397216	regulatory region 397216	1729 bp downstream
Rr563327	regulatory region 563327	1702 bp distal
Rr563328	regulatory region 563328	1942 bp distal
Rr563329	regulatory region 563329	972 bp distal
Rr563330	regulatory region 563330	within coordinates
Rr563331	regulatory region 563331	193 bp proximal