rs31442625 SNP Detail

Summary

• ID
  rs31442625
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146890173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGGGTTAAGA GTTGAAATCG GATGTGAGCT GGGTGGTGCA
  GGCTCCTCTT CCTGGTTTGC ACAACCTGTG TGCTTTTTAT CCTTAAGTGG CAGGAAGAAA
  R
  CTAATCCGAT GGATGGCTGA GGTTTTGTTC TCGGCTCACT TATACAATTT ATTGAGAGTT
  TCACCCTTAT ATCTCAATTC CTTCCTGAAG GACTTTATG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45535673	mCV24071630	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss136048058	ENSMUSSNP2430419	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss321011564	CHEV_3_146847382	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31442625					SNP	A	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146890173 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13926	CpG island 13926	1763 bp distal
Gm65492	predicted gene, 65492	within coordinates
Rr375882	regulatory region 375882	1837 bp downstream
Rr587134	regulatory region 587134	1802 bp distal
Rr587135	regulatory region 587135	1370 bp distal
Rr587136	regulatory region 587136	166 bp distal