rs31441611 SNP Detail

Summary

• ID
  rs31441611
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:125197164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAATATTAC ATGTATTGCT
  TATAACTGAA GACACACACA CCAGATTAGA GAGTATTCTG CAGCTCTATT CTGTCTTGAA
  ACAAGTTTTC ATTTTTTTTC TTGTATATTT ATATTTAAAT ATATATATGA ATATATATAT
  ATATAATTTT TAAATTTGAG AAATAGAAAT GTAGTTTCCC ATAGGAATCA AATTTTACCT
  M
  TGTTAATTAA CATTATATAG TTTTACATAT TTATCTGTCC TTACTGATAA CACATGTTTA
  TGCTATTATA AGTATCAGGA TTTGGTAGCT CACAGACAGT TCTCCAAGTT TTCTATTGCT
  CATTGCTGGC TTTTGTTCTG TTTGAAATTA GACTCTTTGG CTGGCACATA TTCACAACAG
  AAAGCCCCAT CACGAACTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45534877	mCV24033617	ABI	CRAMUS_MOUSE	f	SNP	C	A	C	C
ss135807824	ENSMUSSNP6457457	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		C
ss320936162	CHEV_3_125106433	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31441611					SNP	C	A	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125197164 () rs orientation: forward

Symbol	Name	Function Class
Ndst4	N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	561 bp upstream
Rr584608	regulatory region 584608	77 bp proximal
Rr584609	regulatory region 584609	572 bp proximal
Tssr31558	transcription start site region 31558	557 bp upstream
Tssr31559	transcription start site region 31559	810 bp upstream