rs31440168 SNP Detail

Summary

• ID
  rs31440168
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:57753185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCAA ATTTAAAGTT GGGTAAAGTC
  R
  ATCCAGATGG GCCTGCTTAC ATCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45535550	mCV22719533	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss135204804	ENSMUSSNP6133709	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss320781802	CHEV_3_57649686	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31440168					SNP	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57753185 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pfn2	profilin 2			Intron
				mRNA-UTR
Rr577164	regulatory region 577164			1619 bp distal
Rr577165	regulatory region 577165			1777 bp distal
Rr577166	regulatory region 577166			1632 bp distal
Rr577167	regulatory region 577167			within coordinates
Rr577168	regulatory region 577168			104 bp proximal
Rr577169	regulatory region 577169			1371 bp proximal
Tssr33340	transcription start site region 33340			1714 bp downstream
Tssr33341	transcription start site region 33341			1926 bp downstream
Tssr33342	transcription start site region 33342			1960 bp downstream