rs31438867 SNP Detail

Summary

• ID
  rs31438867
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:69035220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCT CAAATTTTTC AGAATCGCTC
  S
  GGGCCGGTGA CTCGGTTTGT AATCG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45535037	mCV24615963	ABI	CRAMUS_MOUSE	f	SNP	C	G	C	G
ss135265167	ENSMUSSNP4196715	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G		G
ss320791960	CHEV_3_68931809	CHEVERUD	SCREENING_POP	f	SNP					G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31438867					SNP	C	G	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69035220 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13258	CpG island 13258	328 bp distal
Kpna4	karyopherin subunit alpha 4	795 bp upstream
Rr397714	regulatory region 397714	576 bp downstream
Rr578129	regulatory region 578129	1912 bp distal
Rr578130	regulatory region 578130	1831 bp distal
Rr578131	regulatory region 578131	1683 bp distal
Rr578132	regulatory region 578132	284 bp distal
Tssr902	transcription start site region 902	853 bp upstream
Tssr33537	transcription start site region 33537	1002 bp upstream
Tssr33538	transcription start site region 33538	827 bp upstream
Tssr33539	transcription start site region 33539	802 bp upstream
Tssr33540	transcription start site region 33540	778 bp upstream