rs31438023 SNP Detail

Summary

• ID
  rs31438023
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101206122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAAA AAGCACCCAG TGTTCCTAGT
  R
  CTCTCCCCAG CCCCTTGAGG CCCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45535438	mCV22287370	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss135546298	ENSMUSSNP1469803	ENSEMBL	ENSEMBL_Sanger	f	SNP			A
ss320851741	CHEV_3_101102729	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31438023					SNP	G	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101206122 () rs orientation: forward

Symbol	Name	Function Class
Gm65445	predicted gene, 65445	within coordinates
Rr582002	regulatory region 582002	1310 bp distal
Rr582003	regulatory region 582003	1217 bp proximal
Tssr30898	transcription start site region 30898	1300 bp downstream
Tssr30899	transcription start site region 30899	1270 bp downstream
Tssr34787	transcription start site region 34787	1391 bp downstream
Tssr34788	transcription start site region 34788	1428 bp downstream