rs31436432 SNP Detail

Summary

• ID
  rs31436432
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114704962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTTGATGCT GGTGGTATAG
  CCCCATCATG TTGCCAGAGT TGAAGAAGAC ATGGGTCTCC GCACTCATGT CTGGGAAGGT
  GGCATCATTG TCCCTCTCAG CATGTCCTAG CCTGTTTGCT CTCAGCCTGG GACAGAGCTG
  GTGAGCTGTT GCATTCACAC ATGTGCAGGG AGATGGGGAT GCTGAGGGGT TTCTTCATCT
  Y
  GCAGAGCCTC CTCAGACAGT GGCACCCACT GTCAGAACAT GAAGAGGCCT TTTTCACACA
  CGTAAGAGTT ACTTTTCCAT TCTACAGTGT GGTAAACTTC TGGCAGGCCA ACAGGTGCGA
  TTGTGAGCCA GAAATCTAGA AAAGCTATCC CAGAATGCAT TGAGGCAATT TATTAACAAC
  CATCTGTCTC TTAATTTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48052052	NES11880162	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	C	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31436432					SNP	T	T	C	T	T	C	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48052052	NES11880162	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114704962 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atg7	autophagy related 7			Intron
				Noncoding-Transcript-Variant
Rr636822	regulatory region 636822			938 bp distal