rs31436428 SNP Detail

Summary

• ID
  rs31436428
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114704614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGTAGCC ATAGTTTCTC
  CGAGTTCATG AGTGCGCCAA AATGTCAAGT CCAGAACTTT GAATTTTAGG ACTCTCCTCA
  GCTCCAGCTC TTTTGTGCCT CCTGCCTTCT GTCTTCTCCA GCCATTGTGG AGGTGGTAGT
  GGTGTTTAGA AGCCCGTCCC ACTGAGGACC AAGCCTCTGT CTCTTGTTCC CATGAGGTGA
  W
  GTTTTCCTTT GTTGGTTTCC AGTATCCATC CCCCTTCACT CCCACCCCAA AGAGAGGCTC
  ACTCTACTCC TGCTTGGTTT AGCTTCAAAT ATAGGAAGGG GCCGGGGGAG CAGGACACTC
  AGGGTAGTGA GTCTTCTCTT TATTAAACGT TGATGCTGGT GGTATAGCCC CATCATGTTG
  CCAGAGTTGA AGAAGACATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48052048	NES11880160	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	T	T	A	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31436428					SNP	T	T	A	T	T	A	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48052048	NES11880160	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114704614 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atg7	autophagy related 7			Intron
				Noncoding-Transcript-Variant
Rr636822	regulatory region 636822			590 bp distal