rs31436237 SNP Detail

Summary

• ID
  rs31436237
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27245613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTCCTAC AATGACAATA
  ATGGGTTAAC CCTTTGAACT GTAAGCCCCA ATTAAATATT TTCCACTATA AGAGTTGCTG
  AGGTCCTGGT GTCTCTTCAC AGTAATCAAA CAGGCATCAA CGACAAGCCA AAGAAACCAT
  TCCGCCCAAG GGTTGCTTTG TGAACCCTTT GTGACCCCTA TGAGTCTAGT GTATACATGA
  R
  TATGTTACGG GAACATGGGT AACTCAAAGG CAGTATGTCA TAGAAAAGCC CACTCCGGCA
  TGGGTGATGC TGTCCTGGCC TCCAGCAGAG AGTCACCGAT CCCAGCCATT ATTAACCTGT
  ATTCCCATGG GGGGGAGTGT GTGTGCAAAT TTTATGAATT TTGTACCTTT CATGAGCTTC
  CTGGGCTTTA GAAACCTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45534163	mCV27552811	ABI	CRAMUS_MOUSE	f	SNP		A					G		G
ss60380383	NES15883660	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	G	G	A		A	G	G	G	A	G	G	A	G
ss134702623	ENSMUSSNP3211616	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31436237					SNP	G	A	A	G	G	A	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60380383	NES15883660	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27245613 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr374718	regulatory region 374718			258 bp downstream
Rr574360	regulatory region 574360			1260 bp distal
Rr574361	regulatory region 574361			232 bp distal
Rr574362	regulatory region 574362			397 bp proximal
Tssr28610	transcription start site region 28610			668 bp upstream
Tssr32839	transcription start site region 32839			466 bp downstream
Tssr32840	transcription start site region 32840			510 bp downstream