rs31435904 SNP Detail

Summary

• ID
  rs31435904
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:86991049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAGTCAGC ATACAGCACC
  GCCCTGGAGG ACGGGCGATC TTCGTGGGCG CGCACATTGT AATAACCATT GGTGGGATCC
  TGAGGGCAAG AAGAGAAAAG GGTAAATGTG GGAACTTCCC CCAGTGTAAT AAGCTCTCCT
  GAGTCTTCTG CCCATGCCCA GCTCAATCCA TGTCTCCTCC CCTTCTCACC ATACCGGTGA
  Y
  TCTATCTTCT GTTCCTTCTG CAGACTTCTT GACCACTCCT CCCTGCTGTC CTCCCCCTGC
  AGATCCTCCT ACCCCACGTC CCAGCCAGCC AGTCCTTGTG CCTTGCATCA GTCCTTCCCC
  TCACCTTCAT CTCATACTCT TCCCGGGTGT CAATGGTGTC ACAGCGCAGG TCCTGCTTCA
  GATCCACATC ATCCTTAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss45534249	mCV24905789	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss135453712	ENSMUSSNP6617451	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs31435904					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86991049 () rs orientation: forward

Symbol	Name	Function Class
Kirrel1	kirre like nephrin family adhesion molecule 1	Intron
Rr579434	regulatory region 579434	1075 bp distal
Rr579435	regulatory region 579435	1318 bp distal