rs31435644 SNP Detail

Summary

• ID
  rs31435644
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114702221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAGGGAG CCCGGTAGGC
  TTGGTCCTGC TGCTGTTGAT CTGCATTCAT CCACAGAAGC CAGCTTGGGA AATCTCAGGT
  CCTAGTGTGC AGAGAGCCTG AGCTAGCTGC TGGGTCAGCT CTTGCTGTAC AGTACTTTCA
  GTTTGGTCAT AAAGCTCTCC TGAGTGTCTC GGTCCCCGCC TGAGGGGTTC CTTCCTCGCA
  Y
  CTACTCAGCA GTGCAGCTTC TTATGCTTTC CCCAGAAGGT GGGGGTTTCA GGCAGGCCCA
  GCTGTGTTTT GGAGATGTTC CTAATGCAAA GGAACAGCAA GCAGAGATGA GGGGCCTGGA
  TTGGGAGGCC GGAACAAGGC CCCTTCCTCT TTGATCTTTC CAGCAGCTCT AAAAATAGAG
  CAGGGCTGTT GTCCACTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48052034	NES11880254	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	C	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31435644					SNP	T	T	C	T	T	C	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48052034	NES11880254	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114702221 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atg7	autophagy related 7			Intron
				Noncoding-Transcript-Variant
Rr379964	regulatory region 379964			within coordinates
Rr636820	regulatory region 636820			840 bp distal
Rr636821	regulatory region 636821			within coordinates
Rr636822	regulatory region 636822			1350 bp proximal