rs31435479 SNP Detail

Summary

• ID
  rs31435479
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65300590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTTAGTTGT CTACTTTTAC TTTCTGGGTC CCAGAGATTG
  AACCAAATTG TCACGTTTGT GTCTTTACCC TCTGAGCCAT CTGCATGGTT TAATTTATTA
  Y
  TATTATTATT ATTATTATTA TTATTATTAT TATTACTATT ACATCATTTT AATCAACAAA
  GCCTCTTAGC CTCTAAAAGA CTCTCTCATT ACAGTCTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45535492	mCV24254332	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	C
ss135250849	ENSMUSSNP2322261	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31435479					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65300590 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13227	CpG island 13227	243 bp distal
Cpgi13228	CpG island 13228	131 bp proximal
Cpgi13229	CpG island 13229	1631 bp proximal
Gm5540	predicted pseudogene 5540	168 bp upstream
Rr397698	regulatory region 397698	350 bp downstream
Rr577676	regulatory region 577676	690 bp distal
Rr577677	regulatory region 577677	56 bp distal
Ssr3	signal sequence receptor, gamma	616 bp upstream
Tssr33464	transcription start site region 33464	607 bp upstream
Tssr33465	transcription start site region 33465	574 bp upstream