rs31435184 SNP Detail

Summary

• ID
  rs31435184
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101226217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTGACAT GCTGCAGCCT
  GGTGGGTGGG AAGAACCCAG GCAGTCATCC ACAGTGTGAA CTCAGGGCAG GAGGGAGTGG
  CAGAGAGGGC AGAAAGACCT GTGGGGCCTG GGTCATGAAC AGACTTGCTT GTTACCCGAA
  CGCCATCCTG AAAGCAGTGG GAACTGAACA AGAGTGGTCC AAGCCAGCCA ACTCAGAACA
  Y
  GTGTGCACTT TACAGGGCTC CTTCTGACAG CAGCTTGTAA ACTGACCTGG CTTGGAGGTG
  AGATTAGAGG CCAGGTGAGG CAGGTACATC AACATGCCTG CGGGTGGTTC TGATCCCAAG
  CCAAACTGCT GCAAGACAGC TCATGCCACA CGGGCTAATG CCAGCCATGC GGAGCCTGCA
  CCTTTTACCA TTTTCTTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45534441	mCV23816616	ABI	CRAMUS_MOUSE	f	SNP		T	C				T		T
ss46813517	NES10713831	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T		T	T	T		T	T	T	T		T
ss135546538	ENSMUSSNP6916561	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
ss320851829	CHEV_3_101122824	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31435184					SNP	T	T	C	T	C	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813517	NES10713831	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101226217 () rs orientation: forward

Symbol	Name	Function Class
Gm64409	predicted gene, 64409	within coordinates
Rr582007	regulatory region 582007	784 bp distal
Rr582008	regulatory region 582008	491 bp distal
Rr582009	regulatory region 582009	576 bp distal
Rr582010	regulatory region 582010	174 bp distal