rs31433731 SNP Detail

Summary

• ID
  rs31433731
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34703737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCT TCCTGAAATA CTAGTTGGAC
  R
  GTCGCCCTGA ACCACCCATG GGCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss45533729	mCV24298441	ABI	CRAMUS_MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs31433731					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34703737 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13072	CpG island 13072	within coordinates
Gm64654	predicted gene, 64654	411 bp downstream
Gm64662	predicted gene, 64662	within coordinates
Gm64674	predicted gene, 64674	405 bp upstream
Rr370604	regulatory region 370604	within coordinates
Rr575166	regulatory region 575166	within coordinates
Rr575167	regulatory region 575167	1684 bp distal
Rr575168	regulatory region 575168	267 bp proximal
Sox2	SRY (sex determining region Y)-box 2	817 bp upstream
Sox2ot	SOX2 overlapping transcript (non-protein coding)	within coordinates
Tssr28821	transcription start site region 28821	335 bp upstream
Tssr28822	transcription start site region 28822	399 bp upstream
Tssr28823	transcription start site region 28823	436 bp upstream
Tssr28824	transcription start site region 28824	586 bp upstream
Tssr28825	transcription start site region 28825	634 bp upstream
Tssr28826	transcription start site region 28826	1178 bp upstream
Tssr28827	transcription start site region 28827	1483 bp upstream
Tssr32975	transcription start site region 32975	1099 bp upstream
Tssr32976	transcription start site region 32976	625 bp upstream
Tssr32977	transcription start site region 32977	136 bp downstream
Tssr32978	transcription start site region 32978	168 bp downstream
Tssr32979	transcription start site region 32979	259 bp downstream
Tssr32980	transcription start site region 32980	1126 bp downstream
Tssr32981	transcription start site region 32981	1448 bp downstream