rs31433504 SNP Detail

Summary

• ID
  rs31433504
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:125197293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATATATATA TATATAATTT
  TTAAATTTGA GAAATAGAAA TGTAGTTTCC CATAGGAATC AAATTTTACC TCTGTTAATT
  AACATTATAT AGTTTTACAT ATTTATCTGT CCTTACTGAT AACACATGTT TATGCTATTA
  TAAGTATCAG GATTTGGTAG CTCACAGACA GTTCTCCAAG TTTTCTATTG CTCATTGCTG
  R
  CTTTTGTTCT GTTTGAAATT AGACTCTTTG GCTGGCACAT ATTCACAACA GAAAGCCCCA
  TCACGAACTT TTATTAACCC ACTTGATACA GTGACATAGC TGCAAAGTGA AATCTTATTC
  TCGGATTATG TAGGAAATAT TCAAACTGTC CAGTGAACGA TTATCCAAAT CCTCAAGGGG
  CACCTAATCA ATCAATCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45533321	mCV24033606	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss135807830	ENSMUSSNP3975044	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
ss320936164	CHEV_3_125106562	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31433504					SNP	G	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125197293 () rs orientation: forward

Symbol	Name	Function Class
Ndst4	N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	432 bp upstream
Rr584608	regulatory region 584608	within coordinates
Rr584609	regulatory region 584609	443 bp proximal
Tssr31558	transcription start site region 31558	428 bp upstream
Tssr31559	transcription start site region 31559	681 bp upstream