rs31433321 SNP Detail

Summary

• ID
  rs31433321
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:122069550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGAGAACA ACAGCCAGGA
  ATGTGAAGAA GAAATTACAG TTCCCAGCTG AGAAAAACGA TACTAAGATT ACACCAGGAA
  ATAAAAAGCA AATTGTGGGT ATGTCTGTGT GTTCAGAGGA CTCAGATGCT ACTCAGTTAT
  CAGCAAGACC ACTTTCTCAG AGAAATATGC CAAATGTTTC TGATAGTGAA ACTTACAACA
  R
  TGACTTTGAT GATTCCAGCC CCAGAAATTC AGGGAAAAAA CTGACAGCCC AAAACCACCA
  AAATTTGCAT ATCCAAGAGG AAAAACGAGC CAATGTTGTG TCTCTTACAG AAGTTAGAAA
  GGAGAATTGT AAGAGTCTGG ATGAAGAGGA CCTCAAAATC ACAGAGGAAA AAGTAATTAA
  TGAGAAAGAT TCCCAGCGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss45533525	mCV23980359	ABI	CRAMUS_MOUSE	f	SNP		A	G		G		G
ss51020926	NES13905117	PERLEGEN	MM_PANEL2	f	SNP	A			G		G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs31433321					SNP	A	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51020926	NES13905117	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122069550 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13766	CpG island 13766			1033 bp distal
Dnttip2	deoxynucleotidyltransferase, terminal, interacting protein 2			Coding-NonSynonymous
				Noncoding-Transcript-Variant
Gm17494	predicted gene, 17494			within coordinates
Rr584273	regulatory region 584273			1503 bp distal
Rr584274	regulatory region 584274			880 bp distal
Tssr31491	transcription start site region 31491			1486 bp downstream
Tssr31492	transcription start site region 31492			321 bp downstream