rs3143224 SNP Detail

Summary

• ID
  rs3143224
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102974322 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CACCT CTTCCCAAGA CAGTCCCGAC
  R
  ATGCCTTTAA TCAGCCCAGT CGCGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45236095	mCV22331886	ABI	CRAMUS_MOUSE	r	SNP	C	C	T	C
ss147131083	ENSMUSSNP3636010	ENSEMBL	ENSEMBL_Sanger	r	SNP	C	C		C
ss320441613	CHEV_2_102984134	CHEVERUD	SCREENING_POP	r	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3143224					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102974322 () rs orientation: reverse

Symbol	Name	Function Class
Gm13874	predicted gene 13874	within coordinates
Rr561804	regulatory region 561804	within coordinates