rs31431775 SNP Detail

Summary

• ID
  rs31431775
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68952375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGATGCGCG GGTGACCCGG CGGCTTCTGG AGGCGGCTGG
  CTGAGGGACT GCTTATTACT TAGGACCACG CCCGCACGGG ATGGTTCTGG AGCTGGCGGC
  S
  CGCAGGCTTC TTCCATTGTT ACCTCACAGG TTCCTTGTTC AGTCACCGGC TGGAGGGCTC
  GGCGCGCTCG CCCGCCCCCG TGAGGCTCCG GTCCTCCAA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45533160	mCV25236933	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	G	C
ss135264685	ENSMUSSNP1811537	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31431775					SNP	G	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68952375 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13256	CpG island 13256	within coordinates
Gm65005	predicted gene, 65005	within coordinates
Rr578118	regulatory region 578118	298 bp distal
Rr578119	regulatory region 578119	within coordinates
Rr578120	regulatory region 578120	139 bp distal
Rr578121	regulatory region 578121	91 bp proximal
Rr578122	regulatory region 578122	301 bp proximal
Rr578123	regulatory region 578123	1466 bp proximal
Trim59	tripartite motif-containing 59	300 bp upstream
Tssr29529	transcription start site region 29529	34 bp upstream
Tssr29530	transcription start site region 29530	76 bp upstream
Tssr33523	transcription start site region 33523	383 bp upstream
Tssr33524	transcription start site region 33524	375 bp upstream
Tssr33525	transcription start site region 33525	279 bp upstream
Tssr33526	transcription start site region 33526	68 bp upstream
Tssr33527	transcription start site region 33527	43 bp upstream