rs31431039 SNP Detail

Summary

• ID
  rs31431039
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:50400081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGA TGAATGAGCA TAGACAGGGC
  R
  CAGGAAGCTT TTGTTTCCTC AAAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss45534190	mCV22771510	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss135160750	ENSMUSSNP5541433	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320757861	CHEV_3_50249554	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs31431039					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50400081 () rs orientation: forward

Symbol	Name	Function Class
Rr576159	regulatory region 576159	1528 bp distal
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	Intron
Tssr29027	transcription start site region 29027	1879 bp downstream
Tssr33175	transcription start site region 33175	1852 bp upstream