rs31429896 SNP Detail

Summary

• ID
  rs31429896
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121080354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTTTTAAATT TTTTAAATTA CATGTATTTT ATTTCTTGTT ATGTACACGG TGCTCTACCT
  GCACATACAC TTGCATGCCA AAAGAGGGTA TCAGATCACA TTATGTGAGC CACTATGTGG
  TTGCTGGGAA TTGAACTCAG GACTTCTGGA AGAGCTCTTC CAGAGCTATT AACTGCTGAG
  CCATCTCTCC AGCCCGTGTC TATTTAAATT TAAAATAATA GGGAGACAAC ATTAAAATTC
  ACTTTAAGAG ATCGGTTATC TCAGTTGGTA GAGTGTGAGA TTTTTTTGGG TTTTTTTGTT
  Y
  GTTTGTTTTT TGTTTTTTGT TTTTTCGAGA CAGGGTTTCT CTGTGTAACC CTGGCTGTCC
  TGGAACTCAC CCTGTAGACC AGGCTGACCC GGAACTCAGA AATCTGCCTG CCTCTGCCTC
  CCAAGTGCTG GAATTAAAGG CGTTCACCAA AACTGCCCGG CAACATGAGA CTCTTAATCT
  CAGGGTCATG GATTTGAGCA CCACGTTGGG CACTTCCTTG GGCTGGAGAG ATGGCTCAGC
  AGTTAAGAGC ACTGACTGCT CTTCCGAAGG TCTTGAGTTC AAATCCCAGC AACCACATGG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss45532849	mCV23993544	ABI	CRAMUS_MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs31429896					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121080354 () rs orientation: forward

Symbol	Name	Function Class
Rr375663	regulatory region 375663	1022 bp upstream
Rr584034	regulatory region 584034	1038 bp distal
Rr584035	regulatory region 584035	206 bp distal
Rr584036	regulatory region 584036	326 bp proximal
Rr584037	regulatory region 584037	659 bp proximal