rs31429155 SNP Detail

Summary

• ID
  rs31429155
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:131136900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGATTCAACA TATTAAAACG TACTTAAGAT AACACCACCT
  CCGTTTATCC CTTTATCTCC AGCGACACAT ACCATAAACA AAGTCAACAA CCTTCAAACT
  R
  CCAAAGTAGA AAGATGCATG AAGCCTTTGC TGTGTCTCAT TTGGGAAAGG GTTAGAAGTA
  GCCTTGGGGT AACCTCCTAA AATTGCCACA GGACACTGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45532568	mCV24946418	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs31429155					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131136900 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm66385	predicted gene, 66385			within coordinates
Rr585340	regulatory region 585340			402 bp distal
Rr585341	regulatory region 585341			59 bp proximal
Sgms2	sphingomyelin synthase 2			Intron
				Noncoding-Transcript-Variant
Tssr35690	transcription start site region 35690			238 bp downstream
Tssr35691	transcription start site region 35691			1641 bp downstream