rs31427762 SNP Detail

Summary

• ID
  rs31427762
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146887742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCATTCGTG CTCTCCAAGG GCAGGGGTGG AGGTGACAGG
  AACCTTGGGG AACTAGGCTG GGCCATCTAG CTGGACTGGG GGGTTGGGCA GGTGGCAAGT
  R
  CTCCCCGCGC TGAGCTGATA AAGCGATGTC AGCAAAGGAA CCTAGCTTTG CAGCAAAGTG
  TTGGCACAGC TGTGAGAGCT GCGGGGGCCA CCGGGAGGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45533029	mCV24071918	ABI	CRAMUS_MOUSE	f	SNP		A	A			G		A
ss51050468	NES13900887	PERLEGEN	MM_PANEL2	f	SNP	A			A	A		A	A		G	G	G	G		G
ss136048010	ENSMUSSNP6719714	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					A
ss321011550	CHEV_3_146844951	CHEVERUD	SCREENING_POP	f	SNP									G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31427762					SNP	A	A	A	A	A	G	A	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51050468	NES13900887	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146887742 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13926	CpG island 13926	7 bp proximal
Gm65492	predicted gene, 65492	within coordinates
Rr375882	regulatory region 375882	within coordinates
Rr587132	regulatory region 587132	707 bp distal
Rr587133	regulatory region 587133	206 bp distal
Rr587134	regulatory region 587134	608 bp proximal
Rr587135	regulatory region 587135	795 bp proximal
Rr587136	regulatory region 587136	1528 bp proximal