rs31427506 SNP Detail

Summary

• ID
  rs31427506
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:62413754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGATGAAATT AGCCAAATAC TTCTCTACAG CGTCTTCCTT
  TCAATAAGTC TTAAAAGAGG CGCTGCTAGT CAACAGAAAA TTCAGAACAG AAAGGGAGAA
  R
  AAAAAAAAAA AAAAGACCAG CATATGACTC ACTTTAATGC TAATACTATT ACCTAAACTA
  CTTTTTTCTC CAAGATCTAC ACACTTAAGA CAGTGTTTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45532821	mCV23160691	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss135232102	ENSMUSSNP1367102	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31427506					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:62413754 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dhx36	DEAH-box helicase 36			Intron
				Noncoding-Transcript-Variant
Gm65214	predicted gene, 65214			740 bp upstream
Rr577528	regulatory region 577528			488 bp distal
Rr577529	regulatory region 577529			661 bp proximal
Rr577530	regulatory region 577530			705 bp proximal
Rr577531	regulatory region 577531			753 bp proximal
Tssr33431	transcription start site region 33431			616 bp downstream
Tssr33432	transcription start site region 33432			637 bp downstream