rs31424676 SNP Detail

Summary

• ID
  rs31424676
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:26691697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGCC GTAGCTCCCC GATGGTGGGC
  S
  GAGCCTGGAG GCACGTGGTC CGCTA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45531834	mCV24231315	ABI	CRAMUS_MOUSE	f	SNP		G	C					C
ss51442552	NES14434466	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	G	C		C	C	C	C		G	G	G		C
ss134696923	ENSMUSSNP2970633	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C
ss320687939	CHEV_3_26536470	CHEVERUD	SCREENING_POP	f	SNP													C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31424676					SNP	G	G	C	C	C	G	C	C	C	C	C	C	C	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51442552	NES14434466	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26691697 () rs orientation: forward

Symbol	Name	Function Class
Gm65182	predicted gene, 65182	within coordinates
Gm65438	predicted gene, 65438	1260 bp downstream
Rr574324	regulatory region 574324	1665 bp proximal
Rr574325	regulatory region 574325	1899 bp proximal
Spata16	spermatogenesis associated 16	72 bp upstream
Tssr28597	transcription start site region 28597	70 bp upstream
Tssr28598	transcription start site region 28598	98 bp upstream