rs31424567 SNP Detail

Summary

• ID
  rs31424567
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58433861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTTGATGTG TGACCTGTGG TCTGCAATGC CGGGTGTTGC
  TTGGACCCTT CTTAATAGAA GAAACAAGAC TCTTCACACC GAATTCATCT GAACTTAAGT
  R
  TTATTAAAAA TTATATGCTC CCTTATTGTT ATGAGGTTTG TGGGAGTTGA TAGGGAGCAA
  GACATTGCTA GTGTAGGTTA GGTTTCATGC TGAAGATGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45532988	mCV24915803	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss135207062	ENSMUSSNP452780	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320783121	CHEV_3_58330362	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs31424567					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58433861 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
6720482G16Rik	RIKEN cDNA 6720482G16 gene			490 bp upstream
Cpgi13201	CpG island 13201			168 bp distal
Eif2a	eukaryotic translation initiation factor 2A			Intron
				Splice-Site
Rr397681	regulatory region 397681			386 bp downstream
Rr577247	regulatory region 577247			609 bp distal
Rr577248	regulatory region 577248			833 bp distal
Rr577249	regulatory region 577249			58 bp distal
Serp1	stress-associated endoplasmic reticulum protein 1			556 bp upstream
Tssr886	transcription start site region 886			703 bp upstream
Tssr29207	transcription start site region 29207			1312 bp downstream
Tssr29208	transcription start site region 29208			596 bp downstream
Tssr29209	transcription start site region 29209			430 bp downstream
Tssr29210	transcription start site region 29210			379 bp downstream
Tssr33349	transcription start site region 33349			1280 bp upstream
Tssr33350	transcription start site region 33350			712 bp upstream
Tssr33351	transcription start site region 33351			679 bp upstream
Tssr33352	transcription start site region 33352			652 bp upstream
Tssr33353	transcription start site region 33353			568 bp upstream
Tssr33354	transcription start site region 33354			543 bp upstream