rs3142239 SNP Detail

Summary

• ID
  rs3142239
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50788453 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              CTTTAAGATC TAAGATTTTT
  GACACTGAAG GGAAGGAAAG AGATTTCTGA AAGCTACAGC CGACTTTAGT GAGGAAAGCG
  CCCAGGTGTA TGGATTTAAT TCCCATCATT GTCTTCTCAA ACAGCAATGA AGGAAAAAAG
  CCTAAAGCCC TTAATGAGCG CAACAAATTG AGGGGCCTGT GTTACTGTTT CCACCAGGGT
  S
  TGTTTGGACA TCAATCCCTC TACTAAATAA CCTAATTGTC ACTGGGAAAA CAGGTTGGGA
  GAGGATGGGG AGAGATTATG GTATCTCAAA TCTAGCATTC AGCCCCATAT TTTCCACAAA
  ACTAAGCAAC AATTTCACAT TTTTTTTCCT AGCCTCTTTC AAACTCCTTT ACAGAATCAA
  GAGAAAGGAA ACCTAGGCCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47875302	NES11685983	PERLEGEN	MM_PANEL2	r	SNP	G	C	C	C	G	C	C	C	C	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3142239					SNP	C	G	G	G	C	G	G	G	G	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47875302	NES11685983	PERLEGEN	MM_PANEL	r	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50788453 () rs orientation: reverse

Symbol	Name	Function Class
C530044C16Rik	RIKEN cDNA C530044C16 gene	within coordinates
Gm31455	predicted gene, 31455	within coordinates
Gm44109	predicted gene, 44109	within coordinates
Rr543	regulatory region 543	within coordinates
Rr1255	regulatory region 1255	within coordinates
Rr630074	regulatory region 630074	1391 bp distal
Rr630076	regulatory region 630076	1166 bp proximal