rs3142238 SNP Detail

Summary

• ID
  rs3142238
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50790835 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GTCTA AAGCGATGAC ATCCACGTCC
  M
  TGGGTGTGAC CTCTGCATCA TTGAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45976191	mCV22335791	ABI	CRAMUS_MOUSE	r	SNP	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3142238					SNP	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50790835 () rs orientation: reverse

Symbol	Name	Function Class
C530044C16Rik	RIKEN cDNA C530044C16 gene	within coordinates
Gm31455	predicted gene, 31455	within coordinates
Gm44109	predicted gene, 44109	within coordinates
Rr543	regulatory region 543	within coordinates
Rr630076	regulatory region 630076	755 bp distal
Rr630077	regulatory region 630077	1224 bp proximal
Rr630078	regulatory region 630078	1751 bp proximal