rs31422368 SNP Detail

Summary

• ID
  rs31422368
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:36120587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAAGGAGC TCTTCCTGGG
  CAACATCGAG CAGGTAGGAG GCGAGGCCGG ACTGCCCGTG TCCTCTGCTC CCACCTTTCA
  TTCTGGCCAG AGTTGCATGG AACGTTATCC GAGCCCGTAG AAGCCAAACA TCCGAGAGGC
  TGGGCTCGGC GATGTGGCTT AAGTCGTGTC ACAGTGGTTT TTGTTTTGGG GCAGGGTCTC
  R
  TTCAGTAGTA GCCCAGGCTG TCTTTGGACT CGCTCTGTAG CTAGGCATGC CTTGAATACG
  TGGTCCTCTT GCCTCGGTCC TCAGAGTTGC CCATCCAGCT ATTTCTTGTC TTGGAAGTTT
  GTCTCGTATT GTCTGACTTT ATTAAAGTAG AAGTCAACAC TTGGGCTGAG TGGCTGCCCT
  GGTGCAACGT TCAAAGCTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss45532390	mCV22321855	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	A
ss134777634	ENSMUSSNP6277287	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs31422368					SNP	G	G	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36120587 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Acad9	acyl-Coenzyme A dehydrogenase family, member 9			Intron
				Noncoding-Transcript-Variant
Cpgi13079	CpG island 13079			within coordinates
Rr397642	regulatory region 397642			1591 bp downstream
Rr575304	regulatory region 575304			1376 bp distal
Rr575305	regulatory region 575305			1236 bp distal
Rr575306	regulatory region 575306			1056 bp distal
Rr575307	regulatory region 575307			361 bp distal
Tssr28859	transcription start site region 28859			434 bp downstream
Tssr28860	transcription start site region 28860			375 bp downstream
Tssr28861	transcription start site region 28861			336 bp downstream
Tssr28862	transcription start site region 28862			320 bp downstream