rs3142188 SNP Detail

Summary

• ID
  rs3142188
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89010583 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGTGT AAGCTCTTTA CAGCCCCAGT
  Y
  CATGACCTCA GCAGTCAGGC CAGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45938215	mCV23949591	ABI	CRAMUS_MOUSE	r	SNP		G	A					A	G
ss51760903	NES14794789	PERLEGEN	MM_PANEL2	r	SNP	G		A	A	A	A	G		G	G	A		G	G		A
ss133368706	ENSMUSSNP812910	ENSEMBL	ENSEMBL_Sanger	r	SNP		G	A						G
ss321851077	CHEV_6_88983595	CHEVERUD	SCREENING_POP	r	SNP												A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs3142188					SNP	C	C	T	T	T	T	C	T	C	C	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51760903	NES14794789	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89010583 () rs orientation: reverse

Symbol	Name	Function Class
Gm66902	predicted gene, 66902	within coordinates
Rr1306	regulatory region 1306	1075 bp proximal
Rr634069	regulatory region 634069	489 bp proximal
Rr634070	regulatory region 634070	1443 bp proximal