rs3142187 SNP Detail

Summary

• ID
  rs3142187
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89011236 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CAGGC TTTCAAGAGA AGCTGAAACA
  Y
  GGACTTTTAA TGCCCACTCT TAGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45899624	mCV23949599	ABI	CRAMUS_MOUSE	r	SNP		G	A						G
ss51760888	NES14794794	PERLEGEN	MM_PANEL2	r	SNP	G		A	A	A	A	G	G	G	G	A		G	G	G	G		G
ss133368712	ENSMUSSNP386576	ENSEMBL	ENSEMBL_Sanger	r	SNP		G	A						G
ss321851079	CHEV_6_88984248	CHEVERUD	SCREENING_POP	r	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3142187					SNP	C	C	T	T	T	T	C	C	C	C	T	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51760888	NES14794794	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89011236 () rs orientation: reverse

Symbol	Name	Function Class
Gm66902	predicted gene, 66902	within coordinates
Rr1306	regulatory region 1306	422 bp proximal
Rr634069	regulatory region 634069	143 bp distal
Rr634070	regulatory region 634070	790 bp proximal