rs3142181 SNP Detail

Summary

• ID
  rs3142181
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89013956 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CAGTT TCACATGTCA GGAGCCAACG
  R
  AGGCTAGAAC TGACTAAGAG AGAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss45931334	mCV23949942	ABI	CRAMUS_MOUSE	r	SNP		C	T					T
ss51760843	NES14794814	PERLEGEN	MM_PANEL2	r	SNP	C		T	T	T	T	C		C	C	C	T		C	C
ss133368733	ENSMUSSNP6007357	ENSEMBL	ENSEMBL_Sanger	r	SNP		C	T
ss321851090	CHEV_6_88986968	CHEVERUD	SCREENING_POP	r	SNP													T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs3142181					SNP	G	G	A	A	A	A	G	A	G	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51760843	NES14794814	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89013956 () rs orientation: reverse

Symbol	Name	Function Class
Gm66902	predicted gene, 66902	within coordinates
Rr1306	regulatory region 1306	721 bp distal
Rr634070	regulatory region 634070	519 bp distal