rs31421254 SNP Detail

Summary

• ID
  rs31421254
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:100588539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCC CATAAAGATC CATACTGATG
  W
  CATATCATGG ACCTGTGTAC TCCAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46030166	mCV24678677	ABI	CRAMUS_MOUSE	f	SNP	A	A	A				T		T
ss47086769	NES11604592	PERLEGEN	MM_PANEL2	f	SNP				A	A	T		T	T	T	A		T		T	A		A
ss145542801	ENSMUSSNP924746	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						T					T
ss322349744	CHEV_7_108087846	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31421254					SNP	A	A	A	A	A	T	T	T	T	T	A	A	T	T	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47086769	NES11604592	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:100588539 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19492	CpG island 19492	70 bp distal
P2ry6	pyrimidinergic receptor P2Y, G-protein coupled, 6	Intron
Tssr68182	transcription start site region 68182	416 bp downstream
Tssr73796	transcription start site region 73796	1106 bp upstream
Tssr73797	transcription start site region 73797	1041 bp upstream
Tssr73798	transcription start site region 73798	887 bp upstream
Tssr73799	transcription start site region 73799	513 bp upstream
Tssr73800	transcription start site region 73800	442 bp upstream
Tssr73801	transcription start site region 73801	316 bp upstream
Tssr73802	transcription start site region 73802	283 bp upstream
Tssr73803	transcription start site region 73803	207 bp upstream
Tssr73804	transcription start site region 73804	188 bp upstream
Tssr73805	transcription start site region 73805	620 bp downstream